No, he didn't claim that Bush ordered the Bin Laden family flown out -- here is what was actually said for those who have never seen the movie and remain pathetically ignorant:
FAHRENHEIT 9/11: "The White House approved planes to pick up the bin Ladens and numerous other Saudis."
Fearing reprisals against Saudi nationals, the Saudi government asked for help in getting some of its citizens out of the country. National Commission on Terrorist Attacks Upon the United States, Threats and Responses in 2001, Staff Statement No. 10, The Saudi Flights, p. 12;
http://www.9-11commission.gov/hearings/
hearing10/staff_statement_10.pdf
"Now, what I recall is that I asked for flight manifests of everyone on board and all of those names need to be directly and individually vetted by the FBI before they were allowed to leave the country. And I also wanted the FBI to sign off even on the concept of Saudis being allowed to leave the country. And as I recall, all of that was done. It is true that members of the Bin Laden family were among those who left. We knew that at the time. I can't say much more in open session, but it was a conscious decision with complete review at the highest levels of the State Department and the FBI and the White House." Testimony of Richard Clarke, Former Counterterrorism Chief, National Security Council, before The Senate Judiciary Committee, September 3, 2003.
"I was making or coordinating a lot of decisions on 9/11 and the days immediately after. And I would love to be able to tell you who did it, who brought this proposal to me, but I don't know. Since you pressed me, the two possibilities that are most likely are either the Department of State, or the White House Chief of Staff's Office. But I don't know." Testimony of Richard A. Clarke before the National Commission on Terrorist Attacks Upon the United States, March 24, 2004.
FAHRENHEIT 9/11: "At least six private jets and nearly two dozen commercial planes carried the Saudis and the bin Ladens out of the U.S. after September 13th. In all, 142 Saudis, including 24 members of the bin Laden family, were allowed to leave the country."
NOTE: It should be noted that even though the film does not make the allegation, strong evidence has recently come to light that at least one private plane flew to pick up Saudi nationals while private flights were still grounded. Moreover, for nearly three years, the White House has denied that this flight existed. This was reported in the June 9, 2004 St. Petersburg Times article cited below.
After the airspace reopened, six chartered flights with 142 people,mostly Saudi Arabian nationals, departed from the United States between September 14 and 24. One flight, the so-called Bin Ladin flight, departed the United States on September 20 with 26 passengers, most of them relatives of Usama Bin Ladin. National Commission on Terrorist Attacks Upon the United States, Threats and Responses in 2001, Staff Statement No. 10, The Saudi Flights, p. 12;
http://www.9-11commission.gov/hearings/
hearing10/staff_statement_10.pdf
It should be noted that the US Customs and Border Protection document released by the Department of Homeland Security under the FOIA, Feb 24, 2004 lists 162 Saudi Nationals who flew out of the country between 9/11/2001 and 9/15/2001, departing from New York's Kennedy airport, Washington's Dulles, and Dallas Fort Worth.
http://www.judicialwatch.org/archive/
2004/homelandsecurity.pdf.
For an official list of Saudi Passport holders (names redacted) who flew out of the country between 9.11.2001 - 9.15.2001, see US Customs and Border Protection document released by the Department of Homeland Security under the FOIA, Feb 24, 2004;
http://www.judicialwatch.org/archive/
2004/homelandsecurity.pdf.
TheSt. Petersburg Times reported on Jun 9, 2004:
o "Two days after the Sept. 11 attacks, with most of the nation's air traffic still grounded, a small jet landed at Tampa International Airport, picked up three young Saudi men and left. The men, one of them thought to be a member of the Saudi royal family, were accompanied by a former FBI agent and a former Tampa police officer on the flight to Lexington, Ky. The Saudis then took another flight out of the country."
o Moreover: "For nearly three years, White House, aviation and law enforcement officials have insisted the flight never took place and have denied published reports and widespread Internet speculation about its purposeÂ… The terrorism panel, better known as the 9/11 Commission, said in April that it knew of six chartered flights with 142 people aboard, mostly Saudis, that left the United States between Sept. 14 and 24, 2001. But it has said nothing about the Tampa flightÂ… The 9/11 Commission, which has said the flights out of the United States were handled appropriately by the FBI, appears concerned with the handling of the Tampa flight.
o "Most of the aircraft allowed to fly in U.S. airspace on Sept. 13 were empty airliners being ferried from the airports where they made quick landings on Sept. 11. The reopening of the airspace included paid charter flights, but not private, nonrevenue flights." Jean Heller, "TIA now verifies flight of Saudis; The government has long denied that two days after the 9/11 attacks, the three were allowed to fly." St. Petersburg Times, June 9, 2004