@tanguatlay,
1. She did
n't know his phone number, otherwise she would have phoned him.
2. She did
n't know his phone number, otherwise, she would phone him.
Number 1 definitely sounds better [note the change to the negative "didn't". I can see #2 as a possibility if the fact that she still doesn't know the phone number is known to the parties in the conversation.
A: She doesn't know his phone number?
B: Nope. She did
n't know his phone number then either - otherwise, she would phone him [right now].