@WBYeats,
You need a word like 'in' or 'concerning' or a phrase like 'relating to' to join 'clear about' and 'the presentation'.
If there is anything he is not clear about in/concerning/relating to the presentation, please tell him to feel free to contact me.
If you rearrange the sentence it may be clearer:
If there is anything in/concerning/relating to the presentation [that] he is not clear about, please tell him to feel free to contact me.