It sounds to me as if she may not really understand her body to begin with. And that is ok. Im a woman.. my own inner workings confuse me.
When any woman starts a pill, a shot, or an implant for birth control, missing your period is COMMON.. even EXPECTED and sometimes something you are REQUIRED to have happen to your body ( depo shot anyone!)
Missing your period before you have sex does not mean you are pregnant.
Missing it AFTER having sex. Oh yeah. You better be scared

But missing your period before you have sex has some limitations too.
You cant just miss your period for a day or so, after having sex BEFORE then..
Missing your period is only a sign of no pregnancy if you have not had sex since your last period.
I hope that makes sense. Because if you want to get REALLY technical, you can still get pregnant while you are having your period, and even be pregnant and have a period. This is extremely rare. and essentially you would have to conceive literally hours before your period starts for it to apply....
didnt I say womens stuff was confusing ?
One issue that has not been said here is that , if you are taking your B/C pill every day as you are supposed to no matter if you are having sex or not, is that if you take a pregnancy test the odds of getting a false positive is MUCH higher.
The Birth control pill does not work if you only take it before you are having sex. It only works if you take it every day because the medicine HAS TO stop your natural body rhythm , or you are just taking pills for nothing.
So, take your pill every day if you have not been.
If you have been, and you missed your period before you ever had sex, dont be too concerned. That would be like a form of time travel frankly. And missing your period does not mean you have ovulated.
But if you have had sex before with no condom and not taking your pills regularly you will need a pregnancy test and the doctor is the best bet. You would need a blood test this early on. Or you can wait and take a urine test in 45 days.
But if your boyfriend insists on having sex with out any protection, slap him a good one will ya?

Because that is a power play that you dont need.