Well, Sheppard Software seem to agree with me that "system" and "although" fit quite well!
There is a comma and an "is" missing from the question text.
Some whale species have a sophisticated social system. Their communication system may contain some of the elements of true language, although our knowledge of whale communications is not very advanced. Many other animals, including insects, have complex social systems, and many others, such as birds, have sophisticated communications. Whales also have very acute hearing, which gives them advanced echo-location capacities analogous to sonar - but so do bats. All this has led many (though far from all) zoologists to the conclusion that there is no convincing evidence for whale intelligence. A better understanding of whale communications and whale behaviour may solve this problem eventually.
http://www.sheppardsoftware.com/content/animals/groups/profile_long_whales.htm