@RexRed,
You're right, what has happened up to now is that fundamentalist Islam has positioned itself as the only opposition to what a lot of arabs view as American hegemony in the Middle East; propping up dictators in Egypt/Saudi etc. and being completely uncritical of Israel.
The worst attrocities at the moment seem to be going on in Syria, and the Syrian president Bashar-Al-Assad, like Gadaffi in Libya is portraying his opponants as Al-Qaida inspired terrorists. For the most part they're not. They're just ordinary people who want what ordinary people want the world over, to live their lives, and bring up their children free from fear.