@Jeremiah,
												Well, now, that's a whole lot of questions.  Will leaving the trunk open drain the battery?  Well, that's easy enough to determine -- just go and see if you can start the car.  If the car starts, you didn't drain the battery, it's OK.  If it won't start, you've probably got a dead battery which needs to be recharged.  Can a battery be re-charged?  Yes, of course.  Not indefinitely, but if it's only two years old it shouldn't be that much of a problem.  Try this, if the car won't start: get a jump start with jumper cables.  Then drive the car around for a while -- say, half an hour.  That'll recharge the battery without your needing to take it out and put it on a charger.