@Jeremiah,
Well, now, that's a whole lot of questions. Will leaving the trunk open drain the battery? Well, that's easy enough to determine -- just go and see if you can start the car. If the car starts, you didn't drain the battery, it's OK. If it won't start, you've probably got a dead battery which needs to be recharged. Can a battery be re-charged? Yes, of course. Not indefinitely, but if it's only two years old it shouldn't be that much of a problem. Try this, if the car won't start: get a jump start with jumper cables. Then drive the car around for a while -- say, half an hour. That'll recharge the battery without your needing to take it out and put it on a charger.