@farmerman,
Good article. Thanks FM.
Here are the interesting parts of the article (to me):
Quote: In fact, a general evolutionary basis for character regression remains unknown to this day.
I suspected this to be the case, and that's what led to my question.
Quote:There are two principal competing hypotheses to account for regressive evolution.
1. The first is that selection favors eye loss, perhaps for reasons of organismal or neural processing economy.
This is the one I anticipated for eyes, but which I couldn't use to explain pigment changes.
Quote:2. An alternative is that the genes controlling the development of eyes become effectively neutral with the relaxation of selective constraints and are free to accumulate mutations impairing their function.
This is the effect that Brandon (and I) conjectured about earlier, but have no evidence for. I'm still not sure this isn't at least "part" of the de-evolution mechanism, but maybe not a big part.
Quote:One previously unexplored approach to the problems of regressive evolution and troglobitic evolution is genetic linkage mapping... The study was small in scale, but the results provide the first direct evidence that troglomorphic traits are multifactorial... Two closely linked pairs of QTL were found. Each consisted of a regressive and a constructive trait QTL. These close linkages are unlikely to have occurred by chance and suggest that troglomorphic evolution might be facilitated by pleiotropy or by genetic hitchhiking.
Pleiotropy and Genetic Hitchhiking are the same mechanisms uncovered in the Silver Fox studies, except in this case the "linked" traits appear to be what we call "regressive".
So here's my follow-up question: If the loss of pigmentation and eyes are simply the result of random linkages to some other trait which is being selected for... then what is that other trait (or traits) which are being selected for? Whatever it is, seems to be in common for Crickets, Shrimp, Fish, Salamanders, and a host of other organisms. Since those organisms represent a couple of different phyla and several classes, the common factor must be pretty deep.