Coberst:
1) Agreed.
2) Yes, instinct is hard-wired, but it responds in real-time to real-time sensory data. Reason delays response by taking time to evaluate data, plan and mentally test responses before executing them.
3) Reason relies on memory and learning as well as real-time assessment, and is used to plan future actions as well as to modify immediate instinctive responses.
4) Reason requires that new data be evaluated and compared to previously stored data. Conceptualizing is forming a concept: "2: an abstract or generic idea generalized from particular instances". Inference is "a: the act of passing from one proposition, statement, or judgment considered as true to another whose truth is believed to follow from that of the former b: the act of passing from statistical sample data to generalizations" (definitions from Merriam-Webster). Neither needs to be real-time (we can ruminate for hours about past events and what we should have said or done).
5) The neural systems that acquire sensory data and control muscles are not the ones that form concepts, reason and infer. Robots and reptiles can perceive and move. They do not reason. (OK, some robots use fuzzy logic and advanced programming that could be considered reasoning, but I'm talking about the kind that roam around, avoid obstacles, and accomplish basic tasks using fairly simple rules.)
6) Lots of things get duplicated, and nature does reinvent the wheel periodically. But we evolved whole new structures on top of the original reptilian brain (see
Triune brain theory).