@Brandon9000,
If all matter is made up of Atoms, and atoms have no physical structure at all, and are made out of “INVISIBLE ENERGY”, and not tangible matter, then everything that you perceive as physical matter is no more that an illusion, for all that exists, is no more than the eternal energy which can never be created nor ever destroyed, which has manifested itself as this apparent physical universe and the life forms that it "The Eternal' has become.
https://deghys.wordpress.com/2016/08/02/nothing-is-solid-everything-is-energy-scientists-explain-the-world-of-quantum-physics/
An excerpt from the link provided.
Pioneering physicist Sir James Jeans wrote: “The stream of knowledge is heading toward a non-mechanical reality; the universe begins to look more like ‘
A GREAT THOUGHT’ than like a great machine. Mind no longer appears to be an accidental intruder into the realm of matter, we ought rather hail it as the creator and governor of the realm of matter. (R. C. Henry, “The Mental Universe”; Nature 436:29, 2005)
Energy can be and is converted to that which we perceive as matter. In fact, this apparent material universe at the time of the Big Bang, was, according to the most popular theory of the creation of this universe, pure electromagnetic energy, which, In my Opinion, was spewed out of a WHITE HOLE, in the trillions upon trillions of degrees, or, according to scientific measurements (180 million trillion, trillion degrees Fahrenheit), which electromagnetic energy has been converted to that which we perceive as matter, only to be-reconverted to its original form as electromagnetic energy during the phase of the Big Crunch, when all will be ripped apart atom by atom, subatomic particle by subatomic particle, as the universal bodies fall as fire into the Great Abyss, or Black Hole and reconverted back into the singularity, which is the origin of this universe.
A singularity is a region of space-time in which matter is crushed so closely together that the gravitational laws explained by general relativity break down. In a singularity, the volume of space is zero and its density is infinite. Scientists believe such a singularity exists at the core of a black hole, which occurs when a super-massive sun reaches the end of its life and implodes.
General relativity also demands such a singularity must exist at the beginning of an expanding universe, from which singularity our eternal oscillating and ever evolving universe is resurrected to continue on in that everlasting process.
But as I have said previously ,whether scientific theory or scripture, one merely compliments the other, and because this is totally off topic, if you wish to continue with the scientific aspect of the creation, we will have to start a new thread.